f5n

Mobile application for Reference Guided Sequence Alignment using Oxford Nanopore Technology Data

Overview

f5n can run the following on ARM devices,

1. [minimap2] https://github.com/lh3/minimap2 sequence alignment

2. [samtools] https://github.com/samtools/samtools sort

3. [samtools] https://github.com/samtools/samtools index

4. [f5c] https://github.com/hasindu2008/f5c index

5. [f5c] https://github.com/hasindu2008/f5c call-methylation

6. [f5c] https://github.com/hasindu2008/f5c event alignment

We build a standalone application and a cluster of nodes where a master orchestrates the other nodes. In this way, ONT data can be corrected for errors in the field, on the fly!

You can find out more from https://github.com/SanojPunchihewa/f5n